rna-seq-pipeline 开源项目推荐（164 个）

GuyTeichman /RNAlysis

Analyze your RNA sequencing data without writing a single line of code

urmi-21 /pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

gaolabtools /scNanoGPS

Single cell Nanopore sequencing data for Genotype and Phenotype

jumphone /SPRINT

SNP-free RNA editing Identification Toolkit

uc-bd2k /GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator

epigen /rnaseq_pipeline

RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

HKU-BAL /Clair3-RNA

Clair3-RNA - a long-read small variant caller for RNA sequencing data

Taiji-pipeline /Taiji

All-in-one analysis pipeline

PalMuc /TransPi

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

NCBI-Hackathons /SPeW

Automatic Packaging and Distribution of Bioinformatics Pipelines

giuliospinozzi /arpir

Automatic RNA-Seq Pipelines with Interactive Report

SamDozer /crc-ca7-rnaseq-docking-md

Colorectal cancer RNA-seq to CA7 zinc-site docking and molecular dynamics

uc-bd2k /GREP2

GEO RNA-seq Experiments Processing Pipeline

junjunlab /omicScope

A Comprehensive and Integrated Framework for Transcriptomic Data Analysis

AyehBlk /RAPTOR

RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.

BleekerLab /snakemake_rnaseq

A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)

eonurk /RNA-seq-differential-analyses-guideline

A quick recap of widely used differential analyses methods in R for RNA-seq experiments

egaffo /CirComPara

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

zqfang /snakeflow

bioinfo workflow based on snakemake

Lexogen-Tools /quantseqpool_analysis

Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.