rna-seq-data 开源项目推荐（47 个）

seandavi /awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

hbctraining /DGE_workshop

该项目在 GitHub 上没有填写描述

federicomarini /awesome-expression-browser

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

nsalomonis /altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

federicomarini /GeneTonic

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

hbctraining /Intro-to-R-with-DGE

该项目在 GitHub 上没有填写描述

GoekeLab /proActiv

Estimation of Promoter Activity from RNA-Seq data

federicomarini /pcaExplorer

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

uc-bd2k /GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator

nuno-agostinho /psichomics

Interactive R package to quantify, analyse and visualise alternative splicing

egaffo /CirComPara

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

Transipedia /dekupl

Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

theislab /MetaMap

The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.

DiseaseTranscriptomicsLab /markeR

🧬 Toolkit for Evaluating Gene Sets as Phenotype Markers in R

knowmics-lab /RNAdetector

RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis

immunogenomics /amp_phase1_ra_viewer

🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.

bissessk /RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

tAndreani /RNAseQTL

Collection of scripts to map eQTL with RNAseq Data and Genotype by Sequencing

adeschen /SignatureHeatmap

R package to create heatmaps using signature gene list and transcriptomic data

wilkinsonlab /epigenomics_pipeline

Epigenomics workflow system for the semi-automated analysis of NGS data