reproducible-analysis 开源项目推荐（38 个）

leipzig /awesome-reproducible-research

精选的可复现研究案例、项目、教程和媒体列表

gpoore /codebraid

Live code in Pandoc Markdown

ohbm /eCobidas

Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist

XSLiuLab /tumor-immunogenicity-score

TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

tsubotti63 /garmin-running-data-normalizer

Local-first Python CLI and local browser GUI that turn Garmin Account Data Export into reproducible running, FIT, sleep, HRV, and training datasets with QA and provenance.

smu160 /PvsNP

a Python toolbox for reproducible analysis and visualization of NeuroPhysiological data.

lemid /epidemioR

Epidemiologia de Doenças de Plantas Aplicada com R

pythonhealthdatascience /pydesrap_mms

Reproducible analytical pipeline (RAP) for Python discrete-event simulation (DES) implementing an M/M/s queueing model.

nuest /sensebox-binder

A reproducible analysis of environmental data - from hardware to plot

pythonhealthdatascience /rdesrap_stroke

Reproducible analytical pipeline (RAP) for R discrete-event simulation (DES) implementing the Stroke Capacity Planning Model from Monks et al. 2016.

suneelprojects /eazydatafix

Deterministic-first Python framework for Agentic EDA, data quality, validation, cleaning, and reproducible reporting—no LLM required.

holmesjoli /archiveR

An R package for data archiving and linking with code

rosalieb /AltStableStates

Seeking alternative stable states in a deep lake (Bruel et al 2018) — reproduce analysis.

sk-sahu /PGRB

Practical Guide to Reproducibility in Bioinformatics (Work In Progress)

pythonhealthdatascience /pydesrap_stroke

Reproducible analytical pipeline (RAP) for Python discrete-event simulation (DES) implementing the Stroke Capacity Planning Model from Monks et al. 2016.

oryxintel /oryxflow

Faster, cheaper, more trustworthy data analysis for humans and AI agents. A Python library that turns data-science scripts into a cached, reproducible, lineage-tracked pipeline — reruns only what a parameter, data, or code change affects. No server, no account.

pythonhealthdatascience /rdesrap_mms

Reproducible analytical pipeline (RAP) for R discrete-event simulation (DES) implementing an M/M/s queueing model.

ccoolbaugh /SciRep-Coolbaugh-2019

Code and data to recreate figures and analyses for our Scientific Reports paper "Cold exposure induces dynamic, heterogeneous alterations in human brown adipose tissue lipid content".

DivyashreeMohan05 /ALS-SCFA-Gene-Expression-Analysis

Reproducible ALS gene-expression pipeline spanning two GEO cohorts (GSE56500 spinal cord, GSE68605 motor cortex). DEG analysis, SCFA gene panel, consensus GSEA, and cross-tissue concordance. Presented at HIPS Symposium 2026.

Tynab /python-advanced

CyberSoft Data Analyst 08 - Jupyter Basic