pubmed-central 开源项目推荐（48 个）

titipata /pubmed_parser

📋 A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

genomoncology /biomcp

BioMCP：生物医学模型上下文协议

Rostlab /nalaf

NLP framework in python for entity recognition and relationship extraction

krassowski /easy-entrez

通过易用的Python包——基于Entrez E-utilities API——检索PubMed文章、文本挖掘注释或分子数据，来自>35个Entrez数据库。

jakelever /pubrunner

A framework for keeping biomedical text mining result up-to-date

kermitt2 /biblio_glutton_harvester

Open Access PDF harvester

wpoa /open-access-media-importer

A tool for harvesting media files from Open Access articles for upload into Wikimedia Commons

rajdeepmondaldotcom /pmcgrab

A PMC ID in. Clean, loss-aware article JSON out. Parse PubMed Central and JATS XML for biomedical AI, RAG, search, and literature pipelines.

danielfrees /scrapemed

ScrapeMed: Data scraping for PubMed Central.

jakelever /biotext

Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!

tiadams /pmc-downloader

Bash scripts to bulk download full-text PDFs (or any other sources) from PubmedCentral OA articles

Yale-BIDS-Chen-Lab /MedPMC

MedPMC: a high-fidelity medical image–text curation framework from biomedical literature for multimodal foundation models, with released pipelines, curated data, benchmarks, and pretrained models.

wpoa /recitation-bot

MediaWiki bot to upload content to Wikimedia projects and update corresponding citations on Wikipedia.

NCBI-Hackathons /Hidden-Figures

A pipeline for inferring gender for acknowledged individuals in scientific literature on a massive scale

Ailuropoda1864 /PMC-text-mining

The aim of this project is to use the text from biomedical and life science literature to gain insights on research topic trends over time.

napsternxg /PubMed_SelfCitationAnalysis

Repository of our paper on Self-citation analysis in PubMed data

citation-js /plugin-quickstatements

Citation.js plugin to output QuickStatements

LBMCF /format-input

该脚本读取导出后的（.csv|。从Publish或Perish数据库导出的Scopus、Web of Science、PubMed、PubMed Central、Dimensions或Google Scholar的文件，将每个文件都变成一个具有独特格式的新文件。该脚本将忽略重复的记录。

nicford /Pubmed-Pipeline

A library that facilitates the process of building a machine learning pipeline using PubMed as a data source

etowahadams /PMC-figure-downloader

Extract figures and figure captions from PMC open access papers