protein-protein-interaction 开源项目推荐（263 个）

kexinhuang12345 /DeepPurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

lightdock /lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

octavian-ganea /equidock_public

EquiDock: geometric deep learning for fast rigid 3D protein-protein docking

LirongWu /MAPE-PPI

Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

FreshAirTonight /af2complex

预测AlphaFold深度学习神经网络模型中的蛋白质-蛋白质直接相互作用。

zjunlp /OntoProtein

[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding

DeepRank /deeprank

This repository has been integrated in https://github.com/DeepRank/deeprank2

Bindwell /APPT

Affinity Protein-Protein Transformers—State of the art protein-protein binding affinity in seconds!

anton-bushuiev /PPIRef

Dataset and package for working with protein-protein interactions in 3D

Thinklab-SJTU /awesome-molecular-docking

We would like to maintain a list of resources which aim to solve molecular docking and other closely related tasks.

akiyamalab /MEGADOCK

An ultra-high-performance protein-protein docking for heterogeneous supercomputers

sbl-sdsc /mmtf-pyspark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

sbl-sdsc /mmtf-workshop-2018

Structural Bioinformatics Training Workshop & Hackathon 2018

sigven /oncoEnrichR

Explore the cancer relevance of your gene list

dwhswenson /contact_map

Contact map analysis for biomolecules; based on MDTraj

ddd9898 /DeepNano

Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.

jiaqingxie /DeepProtein

Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)

ncbi /BioConceptVec

该项目在 GitHub 上没有填写描述

LirongWu /Prompt-DDG

Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning"

MIDIfactory /AlphaFastPPi

Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening