protein-design 开源项目推荐（376 个）

Peldom /papers_for_protein_design_using_DL

有关使用深度学习进行蛋白质设计的论文列表

a-r-j /graphein

蛋白质图库

PaddlePaddle /PaddleHelix

具备大规模表示学习和多任务深度学习的生物计算平台“螺旋桨”生物计算工具集

Graylab /DL4Proteins-notebooks

Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

RosettaCommons /PyRosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

OATML-Markslab /ProteinGym

Official repository for the ProteinGym benchmarks

RosettaCommons /rosetta

The Rosetta Bio-macromolecule modeling package. Available through license with the University of Washington.

lightdock /lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

adaptyvbio /ProteinFlow

Versatile computational pipeline for processing protein structure data for deep learning applications.

DISCO-design /DISCO

Code for the DISCO model: General Multimodal Protein Design Enables DNA-Encoding of Chemistry

BioTender-max /awesome-bio-agent-skills

精选的AI代理技能集，涵盖生物医学研究，涵盖基因组学、蛋白质组学、单细胞分析、临床人工智能和蛋白质设计。

aqlaboratory /genie

De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds

LPDI-EPFL /masif-neosurf

MaSIF-neosurf: surface-based protein design for ternary complexes.

samsinai /FLEXS

Fitness landscape exploration sandbox for biological sequence design.

BasedLabs /NoLabs

Open source biolab

adaptyvbio /protein-design-skills

Claude Code skills for protein design

cytokineking /FreeBindCraft

BindCraft 修改为可选项使用 PyRosetta 并未安装：无需许可

westlake-repl /Denovo-Pinal

Programmable Design of Functional Proteins from Natural Language

lucidrains /chroma-pytorch

Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch

PapenfussLab /proteindj

Official repository for the ProteinDJ protein design pipeline