ppi-networks 开源项目推荐（33 个）

a-r-j /graphein

蛋白质图库

LirongWu /MAPE-PPI

Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

evanpeikon /Amilioride_Drug_MOA

揭示阿米洛利在多发性骨髓瘤中的作用机制：一种生物信息学方法

evanpeikon /SmallSeqFlow

SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.

pulimeng /CancerOmicsNet

A Graph Neural Network Model for prediction of the effectiveness of a drug on a given cancer cell lines

chao1224 /SGNN-EBM

Structured Multi-task Learning for Molecular Property Prediction, AISTATS'22 (https://proceedings.mlr.press/v151/liu22e.html)

pievos101 /Ensemble-GNN

Ensemble learning with graph neural networks for disease module discovery and classification

ylaboratory /ETNA

Embeddings to Network Alignment - align biological networks between two species

SaniyaKhullar /NetREm

Network Regression Embeddings reveal cell-type Transcription Factor coordination for target gene (TG) regulation

paulmorio /protclus

Python 3 library implementing a number of topological clustering techniques used on protein-protein interaction networks.

THinnerichs /DTI-VOODOO

A PPI network driven approach to drug-target-interaction prediction using deep graph learning methods.

bionetslab /ppi-splitting-pipeline

Automated leakage-aware splitting of a given PPI dataset into train, validation, and test set

Barabasi-Lab /NonCoding

Codes for the paper entitled: Non-Coding RNAs Improve the Predictive Power of Network Medicine

ylaboratory /splitpea-package

Splitpea Python package for building rewired protein-protein interaction networks from alternative splicing events

ylaboratory /splitpea

A tool for calculating PPI network rewiring due to alternative splicing

c3biolab /struct_ppi_pred

This study presents a deep learning-based framework for predicting PPIs between human and gut bacterial proteins using structural data.

aGalhoz /wppi

Gene prioritisation tool using a weighted network methodology based on Gene Ontology and Human Phenotype Ontology annotations to infer closely related genes to given genes of interest.

fedeceru /GraphSAGE

Inductive representation learning on large graphs via stochastic neighborhood sampling and aggregation (SAmple & aggreGatE).

Prokash21 /2022_MPXV_Project

This repository contains code for identifying potential biomarkers of 2022 mpox virus using transcriptomic and machine learning analysis.

pulimeng /Biology-Network-Reduction

Graph representation for system biology networks and the reduction of them for machine learning purposes