phenotype-prediction 开源项目推荐（26 个）

Yundi-Zhang /ViTa

🔥 Medical Image Analysis 2025: Towards Cardiac MRI Foundation Models: Comprehensive Visual-Tabular Representations for Whole-Heart Assessment and Beyond

grimmlab /easyPheno

easyPheno: a model agnostic phenotype prediction framework

Yundi-Zhang /WholeHeartRL

MICCAI 2024: Whole Heart 3D+T Representation Learning Through Sparse 2D Cardiac MR Images and has been invited for an ORAL presentation (2.7%)🔥 and nominated for the Best Paper Award.

LeibnizDSMZ /bacdive-AI

Apply AI-based trait prediction from BacDive to your own genomes.

transbioZI /BioMM

BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data

univieCUBE /phenotrex

Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn

foundation29org /RareCrowds

Package to serve public and freely-available data from rare disease patients.

niekverw /ukpheno

Create binary traits for UKbio using ICD/OPER/medication/self reports/age of diagnosis/visit-dates etc). The current output includes variables on history, study visit, future, time-to-first-event, episode-duration. this is a starting point to construct your favorite trait in ukb. The code was written on the go, so not super clean code..

omid-arhami /topolow

A physics-inspired R package for robust Euclidean embedding of sparse, non-metric dissimilarity data. Particularly powerful for antigenic cartography and viral evolution tracking, but applicable to any domain with incomplete similarity measurements. Published in *Bioinformatics* (2025).

grimmlab /phenotype_prediction

A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species

ivanwilliammd /iderare-pheno

IDeRare Phenotype Analysis suite : Convert Indonesia SATUSEHAT terminology (SNOMED-CT, LOINC, ICD-10) to Rare Disease Terminology / Ontology (HPO, OMIM) and find the likelihood differential gene and disease explaining patient phenotype

robail-yasrab /RSML-to-Image

该项目在 GitHub 上没有填写描述

seungchan-an /ras

Relative adiponectin score (RAS) model

ivanwilliammd /IDeRare

Indonesia Exome Rare Disease Variant Discovery Pipeline. Phenotype analysis part available on Streamlit and PyPi

superphy /kmer

Using machine learning to predict E. coli phenotypes

pyubero /quantitative_mutations

A class based on COBRApy to handle quantitative mutations on metabolic models.

Yun-Ching-Chen /GIBI

Bayesian Network Model Predicting Personal Phenotypes using Genome-Sequencing Data

MoisePlacier /Omic_data_and_phenotype_prediction

This project was part of the M2 Data Science at L'Institut Agro Rennes, in partnership with the INRAE BioForA unit/Comparison of variable selection strategies (MLM, FarmCPU, RF) for complex trait prediction. Analysis of biological signal orthogonality vs population structure via EMD distance.

GenomeNet /LLM-BioEval

MicrobeLLM is a Python tool that harnesses the power of large language models (LLMs) for microbial phenotype prediction.

LaboratorioBioinformatica /PHEMALE

PHEMALE-Bacteria: tool for prediction of bacterial phenotypes based on its genome