mofa 开源项目推荐（18 个）

bioFAM /MOFA2

多组学因子分析

bioFAM /mofaflex

factor models for omics data

bioFAM /mofax

Work with trained factor models in Python

lac5q /beastmode

Beastmode: MofA (Mixture of Agents) orchestration framework for Hermes/OpenClaw/Codex with MemroOS-style context continuity.

Abdullah-I-Ali /OmicsFlow

A modular Nextflow pipeline for multi-omics integration, survival machine learning, and automated reporting.

BNTechie /bioinformatics-workflow

Differential Expression Analysis of protein, Gene set enrichment analysis, Multi-omic factor analysis, Pathway analysis, WGCNA

yazbeck /mola-fsel-nf

Nextflow pipeline integrating TCGA multi-omics with MOFA and downstream LASSO to reveal tissue-specific oncogene selection pressures

louis-alexandre-laguet /Multi-objective-Task-Allocation-Fog-Cloud

This project optimizes task allocation in Fog and Cloud Computing environments using multi-objective optimization techniques. It computes and analyzes Pareto fronts using MOCS and MOFA algorithms. The project includes Jupyter notebooks for data preparation, Pareto front calculation, and solution analysis.

dr-richard-barker /veg05-integrated-omics

Integrated host transcriptome (OSD-767) × microbiome (OSD-766) multi-omics analysis of ISS VEG-05 tomato: spaceflight dysbiosis and a microbe-driven host defense response.

DilaDeniz /multiomics

High-performance multi-omics integration: VCF · RNA-seq · methylation · proteomics · scRNA-seq → HTML/JSON reports, real-time TUI. Written in Rust.

Brothers15691 /Multi-omics

🔍 Explore multi-omics integration with DIABLO, DIVAS, and VAEs, providing clear methods for combining diverse data without implying causation.

vanbuggenum /Multimodal-Plasmacell_manuscript

Documentation analysis and manuscript figures

vanbuggenum /QuRIE-seq_manuscript

Documentation analysis and manuscript figures of QuRIE-seq methods paper.

kris96tian /MOFAX_Online

MOFA+ (Multi-Omics Factor Analysis) online tool

knn1996 /TARGET-WT-analysis

Pediatric cancer somatic mutation landscape

lesolano /Tutorials

Working through the Seurat(scRNA), MOFA(multi-omics integration), and MNIST(machine learning) tutorials

nglaz0v /workshop_omics_integration

🧬 Workshop in omics integration and systems biology

Thokas99 /Useful_code

Personal bioinformatics cookbook of reusable R, Python and Quarto workflows for single-cell, transcriptomics, multi-omics and biomarker analysis.