microbial-genomics 开源项目推荐（196 个）

moshi4 /pyCirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

oschwengers /bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

ParBLiSS /FastANI

快速全基因组相似度（ANI）估计

moshi4 /pyGenomeViz

A genome visualization python package for comparative genomics

labgem /PPanGGOLiN

从微生物基因组构建分区的泛基因组图

bluenote-1577 /skani

用于（宏基因组）基因组和 contig 的快速、稳健 ANI 及比对比例。

satoshikawato /gbdraw

A genome diagram generator for microbes and organelles

moshi4 /ANIclustermap

一个用于绘制全微生物基因组与全部微生物基因组ANI簇图的工具

moshi4 /COGclassifier

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

cmkobel /CompareM2

⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline

hzi-bifo /traitar

From genomes to phenotypes: Traitar, the microbial trait analyzer

klebgenomics /Kaptive

The tool for in silico serotyping

lmrodriguezr /nonpareil

Estimate metagenomic coverage and sequence diversity

Serka-M /mmlong2

Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes

aleimba /bac-genomics-scripts

Collection of scripts for bacterial genomics

BeatsonLab-MicrobialGenomics /micropipe

使用 ONT 测序构建高质量细菌基因组的流程

moshi4 /MGCplotter

Microbial Genome Circular plotting tool for comparative genomics using Circos

bio-miga /miga

MiGA: Microbial Genomes Atlas

MDU-PHL /bohra

A pipeline for bioinformatics analysis of bacterial genomes

dinasv /CSBFinder

A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes