fiji-macro 开源项目推荐（61 个）

gtatters /ThermImageJ

ImageJ 函数和宏用于处理热成像文件

MontpellierRessourcesImagerie /imagej_macros_and_scripts

ImageJ macros and scripts written at the imaging facility MRI

BioImaging-NKI /Foci-analyzer

ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells

quantixed /imagej-macros

quantixed FIJI update site

IMBalENce /EM-tool

an ImageJ toolset for EM image analysis

pmascalchi /ImageJ_Export-LIF-as-Individual-Images

ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)

ElisabethKugler /GliaMorph

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

amironov21 /ImageJ_stereology

Stereological macros for ImageJ

sandorbx /Parallel-Fiji-CMTK-Registration

Bringing the powerfull CMTK registration tool to ImageJ, multi platform, parallel automatic batch processing, neat user interface, works out of the box.

acaccavano /deltaFoF

Set of ImageJ (FIJI) macros to import raw TIF images of time series Calcium imaging recordings, correct for photo-bleaching, identify regions of highest fluorescence change to assist in ROI placement, and calculate deltaF/F as a function of time for each ROI. Please cite Caccavano et. al. bioRxiv 2020.

rsenft1 /FISH-IHC-Colocalization-in-ImageJ

An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.

Guyon-J /Macro_for_Spheroid_Analysis

A simple macro to analysis spheroid areas

kwolbachia /Image_Viewer

ImageJ / Fiji set of plugins and macros providing user friendly handling and visualization of microscopy images

bruvellu /imagej-macros

Collection of macros for image processing in Fiji/ImageJ

boonepeter /snyder-imagej

A repository containing ImageJ macros for the Snyder Lab

GitGorter /Spiky_Batch_Analyzer_For_ImageJ

Batch calcium-flux analysis macro for Fiji/ImageJ with automated baseline correction, peak detection and batch reporting.

VatsJari /MagiCAL

Modular ImageJ/Fiji macros for automated, reproducible preprocessing and analysis of microscopy images.

kaitsull /FijiFISH

FIJI dropdown menu for mFISH registration, segmentation, and quantification.

Turku-BioImaging /filopodia-counter

Fiji script for automated filopodia counting from single cell images.

MarnieMaddock /FIJI-macro-tutorial

A How To Guide for Writing FIJI or ImageJ Macros