exposome 开源项目推荐（19 个）

eric9n /Kun-peng

Kun-peng：一款超高速、低内存占用且准确的分类分类器，适用于所有人

idslme /IDSL.IPA

Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidomics, exposomics, and environmental studies.

ropensci /RAMEN

Regional Association of DNA Methylome variability with the Exposome and geNome (RAMEN) is an R package which goal is to identify Variable Methylated Loci (VML) in microarray DNA methylation data. Then, using genome (G) and exposome (E) data, it can identify which individual (G or E) or joint (G+E or GxE) model better explains the VML variability.

idslme /IDSL.UFA

United Formula Annotation (UFA) for LC-HRMS data

idslme /CCDB

Chemical Correlation Database (CCDB)

barupal /exposome

The Blood Exposome Database

idslme /IDSL.MXP

A light weight and fast parser for reading mzML, mzXML and netCDF data files

scannotation /Scannotation_software

Scannotation is an automated and user-friendly suspect screening tool for the rapid pre-annotation of LC-HRMS datasets. This software combines several MS1 chemical predictors: m/z, retention times, isotopic patterns and neutral loss patterns, to score the proximity between features and suspects, thus efficiently prioritizing compounds of interest.

lorenzoFabbri /paper-helix-multiOmics

PhD paper #1

13479776 /cpva

CPVA 2.0

CuiweiG /exposomeSC

Cell-type-specific exposome-wide association analysis for single-cell data

idslme /IDSL.UFAx

Exhaustive Formula Annotation from ions to formula

mcwdsi /exposd

The EXPOSD ontology represents surrogate data and markers for envirnmental exposures and health outcomes.

tomszar /PheEWAS_sexdiff

Phenome-wide sex differences in environmental effects in NHANES

matt-ye /brain-exposome

失智症環境暴露因子的互動查詢工具，證據整理自公開資料集。Interactive explorer for dementia-related environmental exposome factors.

PaulaMartinezCamarero /TFG

Pipeline de R para el análisis estadístico de la relación entre factores clínicos y ambientales con el colangiocarcinoma

reach-equity-lab /reachequitylab

Research site for REACH Equity Lab -- exposome and environmental health work at UT Austin.

PetitPascal /DeSSyPHER

Decision Support System for the Prevention of Human Exposome-related health Risks

PetitPascal /R-scripts

Collection of reproducible data analysis scripts in R