ensembl 开源项目推荐（101 个）

scverse /gget

Glugget能够高效查询基因组参考数据库

vanheeringen-lab /genomepy

genes and genomes at your fingertips

tariqdaouda /pyGeno

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Ensembl /ensembl-compara

The Ensembl Compara Perl API and SQL schema

Ensembl /ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

ding-lab /hotspot3d

3D hotspot mutation proximity analysis tool

Huber-group-EMBL /biomaRt

R package providing query functionality to BioMart instances like Ensembl

natera-open-source /vep-rs

Fast Rust reimplementation of Ensembl VEP (Variant Effect Predictor): same flags and output formats, 100x+ faster

noamteyssier /ggetrs

Efficient querying of biological databases

jorainer /ensembldb

This is the ensembldb development repository.

gawbul /pyEnsemblRest

A client for the Ensembl REST API written in the Python programming language

robinvanderlee /positive-selection

Scripts and procedures for detecting positively selected genes and codons in primates

Ensembl /treebest

TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)

bigbio /pgatk

Python tools for proteogenomics analysis toolkit

dhimmel /ensembl-genes

Extract the Ensembl genes catalog to simple tables

pwilmart /fasta_utilities

Utilities for downloading and managing protein FASTA files.

TimothyStiles /worst-genbank-ever

The most awful genbank file you'll ever need to parse.

Ensembl /ensembl-git-tools

A collection of tools which Ensembl uses to work with Git

stevekm /reference-annotations

Makefile for reference annotations for genes & genomic regions

Ad115 /ICGC-data-parser

To automate data collection from ICGC database.