dna-barcode 开源项目推荐（22 个）

bebop /poly

A Go package for engineering organisms.

Koeng101 /dnadesign

A lua package for designing DNA.

LaoZZZZZ /bartender-1.1

This bartender version could handle arbitrary length of barcode

emmawahl /facepai

Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.

boopsboops /spider

Official GitHub repository for the R package "Species Identity and Evolution in R" (spider)

m-orton /Arctic-Biogeographical-Analysis-Pipeline

Arctic Community Similarity using DNA Barcoding Data

gear-genomics /bgen

Barcode Generator

stevexniu /fishprobe

FISHprobe: DNA Probe Design Pipeline

gear-genomics /bistro

bistro: barcode distribution

brendanf /rITSx

Extract ITS and Neighboring Regions from Eukaryotic DNA Sequences

Landrylab /Evans-Yamamoto_et_al_2021

Jupyter notebooks for BFG-PCA related simulation and analysis.

m-orton /PlotlyMapTutorial

Map plotting with Plotly using public BOLD API COI data

ekaminuma /BARCODE_STAT

DNA BARCODE Statistics : Number of GBIF BOLD entries 2014-11-27

mdcjansen /DBA

DNA barcoding analysis pipeline

GBIF-Europe /bold_sequence

Linking BOLD sequences to specimens in GBIF

itu-bioinformatics-database-lab /Hierarchical-Supervised-Learners

Artifact repository for the paper "Scalable Classification of Organisms into a Taxonomy Using Hierarchical Supervised Learners", Journal of Bioinformatics and Computational Biology, 18(05), 2050026. doi:10.1142/S0219720020500262

andrewd789 /Barcoding_invertebrate_biodiversity

Code and data used for analysis and estimation of invertebrate biodiversity on a temperate forested island (Hauturu) based on DNA barcodes and soil DNA metabarcoding data.

rdmpage /bold-literature-harvest

Harvest literature from BOLD website

Jonathan-Edwall /Development-of-a-Dna-barcode-for-species-identification-of-tuna

Repository containing a python script for barcode gap plotting, as well as an example input-file for the script.

DanYamamotoEvans /BFG-PCA

Jupyter notebooks for BFG-PCA related simulation and analysis.