cobrapy 开源项目推荐（55 个）

micom-dev /micom

Python package to study microbial communities using metabolic modeling.

SBRG /ssbio

A Python framework for structural systems biology

klamt-lab /straindesign

StrainDesign是一个用于代谢网络计算设计的Python包，基于COBRApy

SBRG /cobrame

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

ModelSEED /ModelSEEDpy

Python package for building and analyzing models using ModelSEED

resendislab /corda

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

mjenior /riptide

Reaction Inclusion by Parsimony and Transcript Distribution

MetExplore /miom

Constraint-based modeling of metabolism using Mixed Integer Optimization

biosustain /multitfa

Multivariate thermodynamics-based metabolic flux analysis in Python.

BeeAnka /EFMlrs

Python package and workflow for EFM calculation via (mp)lrs and efmtool

SBRG /ecolime

Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression

openCONTRABASS /CONTRABASS

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

c-mayer /ECMproject

ECMproject is a standalone python program, which enumerates Elementary Conversion Modes (ECMs) of metabolic models.

Daxlia /ReseauFlux

Machine learning pipeline for genome-scale metabolic engineering and intervention ranking in E. coli using COBRApy and FBA.

findCP /findCPcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

CompBtBs /FalseDiscoveriesAnalysis

Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis

tracykuper /mimics

Multi-scale model of Metabolism In Cellular Systems

biosimulators /Biosimulators_COBRApy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

OSS-Lab /FBAhv

FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)

Mirasadeghi /Ecoli-FBA-COBRApy

Flux Balance Analysis of E. coli Core Model using COBRApy | Systems Biology & Data Science