clinical-nlp 开源项目推荐（436 个）

maziyarpanahi /openmed

本地优先的医疗 AI：在您掌控的硬件上进行临床 NER 和 HIPAA PII 去标识化。2,200+ 医疗模型、35 种由模型支持的 PII 语言，以及 Python、MLX、Android 和浏览器运行时。Apache-2.0 SDK。

sunlabuiuc /PyHealth

A deep learning toolkit for healthcare AI: EHR (MIMIC, eICU, OMOP), clinical text, signals and imaging. 30+ models, reproducible pipelines.

medspacy /medspacy

使用spaCy的临床NLP图书馆。

abachaa /MedQuAD

Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites

BIDS-Xu-Lab /Me-LLaMA

A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks

mauro-nievoff /MultiCaRe_Dataset

Open-source multimodal dataset: 98K+ clinical cases & 139K+ medical images from PubMed Central

lindvalllab /clinicalXLNet

Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation

ritaranx /ClinGen

[ACL 2024 Findings] This is the code for our paper "Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models".

som-shahlab /factehr

Fact Verification for Clinical Notes with LLMs

NLPatVCU /multitasking_transformers

Multitask Learning with Pretrained Transformers

AI-in-Health /Patient-Instructions

[NeurIPS 2022] Code for "Retrieve, Reason, and Refine: Generating Accurate and Faithful Discharge/Patient Instructions"

kavgan /clinical-concepts

Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts by leveraging the volume within large amounts of clinical notes.

hugoabonizio /clinical-protocols-br

Adapting Qwen2.5-14B to Brazilian SUS clinical guidelines. Includes 2 open benchmarks (HealthBench-BR, PCDT-QA) and 8 model checkpoints from the paper's ablations.

asyml /ForteHealth

The project is in the incubation stage and still under development. ForteHealth is a flexible and powerful ML workflow builder for biomedical and clinical scenarios. This is part of the CASL project: http://casl-project.ai/

justin-marian /awesome-medical-rag

⭐ Awesome Medical QA/RAG: A curated collection of 250+ papers, datasets, and benchmarks for Healthcare AI, Medical RAG, Knowledge Graphs, Clinical LLMs, and Multilingual Reasoning.

shaoxiongji /DCAN

Dilated Convolutional Attention Network for Medical Code Assignment from Clinical Text, ClinicalNLP workshop at EMNLP 2020

umcu /dutch-medical-concepts

Instructions and code to create for a table of UMLS, SNOMED or HPO concepts containing Dutch medical names, usable in named entity recognition and linking methods such MedCAT.

opentargets /mira

Multi-source Indication & Report Analytics

medspacy /sectionizer

A rule-based Python module for spitting documents into sections.

AndyZHENG0715 /TCM-Sage

Evidence-synthesis RAG assistant for TCM practitioners — hybrid vector + knowledge graph retrieval over 17 classical texts, with query classification, self-critique verification, and blind A/B arena evaluation.