cazymes 开源项目推荐（11 个）

HobnobMancer /cazy_webscraper

Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.

HobnobMancer /cazomevolve

`cazomevolve` ('cazome-evolve') investigates the evolution of CAZomes, and identifies CAZy families that co-occur within the genomes of candidate species, more frequently than would be expected by lineage.

HobnobMancer /pyrewton

Python package for the identification of comprehensive CAZyomes of candidate species

HobnobMancer /SI_Foltanyi_et_al_2023

Bioinformatics work for the paper Foltanyi et al., 2022

HobnobMancer /SI_Hobbs_et_al_2023_Pecto_Dickeya

Supplementary information on the exploration of the CAZome and carbohydrate processing enzyme activities in soft rot Pectobacteriaceae

HobnobMancer /SI_Hobbs_et_al_2023_cazywebscraper

Supplementary information for analyses reported in Hobbs et al. (2023), for presenting the software package `cazy_webscraper`

Qasim-Hussain-Code /B.longum_CAZyme_Profiling

In silico CAZyme profiling of the glycoproteome of B. longum. It maps the complex multidomain Glycoside Hydrolase (GH) architectures and syntenic gene clusters that drive host-secreted mucin foraging, recalcitrant glycan depolymerization, and symbiotic cross-feeding.

Qasim-Hussain-Code /B.xylanisolvens_E.coli_CAZyme_Profiling

Comparative genomic profiling of Carbohydrate-Active Enzyme (CAZyme) repertoires and Polysaccharide Utilization Loci (PULs) delineating the complex glycan foraging capacities of intestinal Bacteroides xylanisolvens versus Escherichia coli K12.

koitaxoumemesa /cameo

Repository for CAMEO publication

Teaholicus /rational-enzyme-engineering

Reproducible pipeline that turns an enzyme structure into a ranked, screenable set of mutation targets for improving catalytic activity. Validated against 100 published β-glucosidase mutants, then applied to an uncharacterised fungal arabinofuranosidase.

Teaholicus /fungal-multidomain-cazyme-mining

Pipeline for discovering secreted multidomain fungal CAZymes using SignalP 6, DeepTMHMM, dbCAN, CD-HIT and homology-based candidate prioritization.