blastn 开源项目推荐（52 个）

OpenHero /gblastn

G-BLASTN是一种基于广泛使用的NCBI-BLAST的GPU加速核苷酸比对工具。

drostlab /metablastr

Seamless Integration of BLAST Sequence Searches in R

ropensci /phylotaR

An automated pipeline for retrieving orthologous DNA sequences from GenBank in R

vestalisvirginis /synphage

Pipeline to create phage genome synteny graphics from genbank files

laurentnoe /yass

genomic alignment similarity search tool

Azure /azure-hpc

Microsoft Azure HPC & Big Compute

tao-bioinfo /PrimerServer

Obsolete!! Begin to turn to PrimerServer2

jaswindersingh2 /RNAcmap

A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

Reconfigurable-Computing-CalPoly-Pomona /Reconfigurable-BLAST-N

The Blastn (Basic Local Alignment Search Tool for Nucleotides) algorithm with Smith-Waterman scoring implemented for FPGAs

NuruddinKhoiry /blastMining

Mining NCBI BLAST output

asadprodhan /A-beginner-s-guide-to-Bioinformatics

A beginner’s guide to Bioinformatics

brianSalk /blast_practice_data

data used in the youtube video

mkandziora /PhylUp

PhylUp - a python package to automatically generate alignments (or update alignments and phylogenies) using local sequences or a local Genbank database while controlling for the number of sequences per OTU.

TuanjieNew /Indel-Finder

A program used to find indels on target gene edited by CRISPR/Cas9

JacobLondon /Blastn

The Blastn (Basic Local Alignment Search Tool for Nucleotides) algorithm with Smith-Waterman scoring implemented for FPGAs

vizkidd /QuickBLAST

BLAST without Sys.Call()

BTalamantesBecerra /omicR_for_RStudio

omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…

georgiesamaha /ProbeRemap

Map SNP positions to a supplied reference assembly using BLAST. Filter results for best hit. Output in plink format.

pranavkhurana /Seabuck-thorn

This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.

kokinide /PARSID

Parser of BLAST results