bisulfite-sequencing 开源项目推荐（38 个）

maxplanck-ie /snakepipes

基于 snakemake 和 python 的可定制工作流程，用于分析 NGS 数据

nf-core /methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair

RWilton /Arioc

Arioc: GPU-accelerated DNA short-read alignment

kdkorthauer /dmrseq

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

NuttyLogic /BSBolt

BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool

BIMSBbioinfo /pigx

Pipelines in genomics

aryeelab /bisulfite-seq-tools

Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).

smithlabcode /abismal

Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.

hhg7 /defiant

Differential methylation: Easy, Fast, Identification and ANnoTation

spabinger /tabsat

Targeted Amplicon Bisulfite Sequencing Analysis Tool

sing-group /bicycle

bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis

seb-mueller /snakemake-bisulfite

Pipeline for BS-Seq data based on snakemake

OpenOmics /methyl-seek

Bisulphite-sequencing DNA methylation pipeline

christacaggiano /ENCODE_WGBS

a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.

supermaxiste /ARPEGGIO

A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.

BGI-SZ /BSVF

Bisulfite Sequencing Virus integration Finder

andrewdavidsmith /transferase

The transferase system for retrieving methylome data from methbase

niekwit /methyl-seq

Snakemake workflow for EM-seq / bisulfite sequencing (WGBS) DNA methylation analysis

lancelothk /BSPAT

bisulfite sequencing pattern analysis tool

AlexanderSimWS /AutomatedBisulfiteAnalysis

A simple python script to find the amount of methylation after bisulfites sequencing from .fasta files