biological-simulations 开源项目推荐（132 个）

brian-team /brian2

Brian是一个用于峰值神经网络的免费开源模拟器。

opensim-org /opensim-core

SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

rileyjshaw /terra

👾 JS library for simple biological simulations and cellular automata

SeanCole02 /doom-neuron

Human brain cells play Doom (CL1)

BlueBrain /BluePyOpt

Blue Brain Python Optimisation Library

evoplex /evoplex

Evoplex is a fast, robust and extensible platform for developing agent-based models and multi-agent systems on networks. It's available for Windows, Linux and macOS.

brian-team /brian2cuda

A brian2 extension to simulate spiking neural networks on GPUs

DamCB /tyssue

An epithelium simulation library

biosimulations /biosimulations

A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results

brainpy /examples

Examples of BrainPy

PMEAL /pytrax

Random walk to calculate the tortuosity tensor of images

instadeepai /DEgym

A LLM-friendly framework for translating dynamical equations to gymnasium-compatible RL environments.

bio-phys /BioEn

BioEn - Bayesian Inference Of ENsembles

KeepFloyding /OpenFOAM-phys-flow

Openfoam library for physiological flow. Solvers and boundary conditions.

sina2266 /peykar-simulator

Biological Modeling & Simulation Platform: Peykar is a source-available foundation for registering, composing, executing, and evaluating versioned biological models. Its long-term scope extends from molecular and cellular models to tissues, organs, and interacting systems.

sophtang /EntangledSBM

Code for Entangled Schrödinger Bridge Matching

sophtang /BranchSBM

Code for Branched Schrödinger Bridge Matching (ICLR 2026)

bitmonky /PeerTree

PeerTree.js An Organic Inspired Network Architecture. Build Apps that scale just by cloning existing nodes for more power..

souvik1982 /Brain

Simulating a primordial brain. A biological (spiking) neural network structuring itself through natural selection.

tzeitim /genome-blender

Scripts to create cartoons of 3D genomes