biological-data-analysis 开源项目推荐（289 个）

SkBlaz /py3plex

Py3plex - A multilayer complex network visualization and analysis library in python3

opendilab /DI-bioseq

生物序列搜索决策智能平台

MaxValue /Terpene-Profile-Parser-for-Cannabis-Strains

Parser and database to index the terpene profile of different strains of Cannabis from online databases

WhoIsJack /python-bioimage-analysis-tutorial

A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.

lmb-freiburg /Unet-Segmentation

The U-Net Segmentation plugin for Fiji (ImageJ)

chriscainx /mnnpy

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

DevoLearn /devolearn

Accelerate data driven research on embryos with deep learning models 🔬

bobeobibo /phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

SMRUCC /GCModeller

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

Pex2892 /PETAL

PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis

fermo-metabolomics /FERMO

Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.

BioJulia /BioSymbols.jl

Nucleic and amino acid primitive types

sina2266 /peykar-simulator

Biological Modeling & Simulation Platform: Peykar is a source-available foundation for registering, composing, executing, and evaluating versioned biological models. Its long-term scope extends from molecular and cellular models to tissues, organs, and interacting systems.

TillMacher /TaxonTableTools

TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

vanvalenlab /deepcell-spots

Deep Learning Library for Spot Detection

openvax /pepnet

Neural networks for amino acid sequences

pylattice /pyLattice

A python library for advanced lattice light-sheet image analysis

febos /SQUARNA

RNA secondary structure prediction tool

mozanunal /digital-filtering-of-ecg-signal

Self-contained Jupyter notebook that walks through loading raw ECG, designing digital filters, visualising spectra, cleaning noise and extracting heart-rate features—perfect for teaching bio-signal processing.

EnzoAndree /HmmPy

A Pure-Python parser of HMMER3 output