bioinformatics-tool 开源项目推荐（695 个）

tseemann /abricate

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

lightdock /lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

sunduanchen /Scissor

Scissor package

inab /trimal

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

JianYang-Lab /gsMap

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

colindaven /awesome-pangenomes

A list of software for pangenomics

KarchinLab /open-cravat

A modular annotation tool for genomic variants

GuyTeichman /RNAlysis

Analyze your RNA sequencing data without writing a single line of code

telatin /seqfu2

🚀 seqfu - Sequece Fastx Utilities

Superzchen /iLearnPlus

iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.

avrabyt /YouTube-Tutorials

📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈

BirolLab /RNA-Bloom

🌺 reference-free transcriptome assembly for short and long reads

rcedgar /reseek

Protein structure alignment and search algorithm

imgag /ClinCNV

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

PabloEnmanuelRamos /BioBlender21

Blender plugin to process biological data and molecular work.

chriscainx /mnnpy

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

ShujiaHuang /geneview

Genomics data visualization in Python by using matplotlib.

ncsa /NEAT

NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.

JamieHeather /stitchr

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

josiahseaman /FluentDNA

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.