biodiversity-informatics 开源项目推荐（126 个）

tdwg /dwc

Darwin Core standard for sharing of information about biological diversity.

pyinat /pyinaturalist

Python client for iNaturalist

gbif /ipt

GBIF Integrated Publishing Toolkit (IPT)

SpeciesFileGroup /taxonworks

Workbench for biodiversity informatics.

OneZoom /OZtree

OneZoom Tree of Life Explorer

earth-chris /elapid

Species distribution modeling tools, including a python implementation of Maxent

ArctosDB /arctos

Arctos is a museum collections management system

tdwg /dwc-qa

Public question and answer site for discussions about Darwin Core

gnames /gnfinder

GNfinder finds scientific names in UTF8 texts, PDF files, MS Word/Excel documents, URLs etc.

BelgianBiodiversityPlatform /python-dwca-reader

🐍 A Python package to read Darwin Core Archive (DwC-A) files.

funecology /fundiversity

📦 R package to compute functional diversity indices efficiently

ai4er-cdt /geograph

GeoGraph provides a tool for analysing habitat fragmentation and related problems in landscape ecology. GeoGraph builds a geospatially referenced graph from land cover or field survey data and enables graph-based landscape ecology analysis as well as interactive visualizations.

josafatburmeister /BirdSongIdentification

Fully automated machine learning pipeline for bird sound recognition

ropensci /occCite

Querying database aggregators and citing primary sources of resulting occurrence records.

BioGeoMacro /GIFT

📦 R package to extract data from Global Inventory of Floras and Traits (GIFT)

leisux /ipybd

Powerful Data Cleaner For Biodiversity

adrientaudiere /MiscMetabar

R package MiscMetabar: Miscellaneous functions for metabarcoding analysis

pensoft /OpenBiodiv

Open Biodiversity Knowledge Management System

naturalis /trait-geo-diverse-dl

Ecological Niche Modelling Using Deep Learning

specify /specify6

Source Code for Specify 6, Biological Collections Management Platform