bioconductor-package 开源项目推荐（214 个）

saezlab /dorothea

R package to access DoRothEA's regulons

waldronlab /curatedMetagenomicData

Curated Metagenomic Data of the Human Microbiome

lima1 /PureCN

Copy number calling and variant classification using targeted short read sequencing

hemberg-lab /SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

hemberg-lab /scmap

A tool for unsupervised projection of single cell RNA-seq data

Al-Murphy /MungeSumstats

Rapid standardisation and quality control of GWAS or QTL summary statistics

catavallejos /BASiCS

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

federicomarini /GeneTonic

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

waldronlab /MultiAssayExperiment

用于多测定数据管理的 Bioconductor 包

drisso /SingleCellExperiment

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

Bioconductor /Biostrings

Efficient manipulation of biological strings

Bioconductor /BiocParallel

Bioconductor facilities for parallel evaluation

MarioniLab /DropletUtils

Clone of the Bioconductor repository for the DropletUtils package.

waldronlab /lefser

R implementation of the LEfSe method

neurogenomics /orthogene

o r t h o g e n e：跨物种基因作图

MarioniLab /scran

Clone of the Bioconductor repository for the scran package.

Bioconductor /GenomicRanges

Representation and manipulation of genomic intervals

waldronlab /curatedTCGAData

Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Bioconductor /SummarizedExperiment

A container (S4 class) for matrix-like assays

waldronlab /cBioPortalData

Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment