bioconductor 开源项目推荐（4,331 个）

benjjneb /dada2

Accurate sample inference from amplicon data with single nucleotide resolution

bernatgel /karyoploteR

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

nbafrank /uvr

一个极其快速的R包管理器，用Rust编写。它是Python的uv的R版。

BioinformaticsFMRP /TCGAbiolinks

TCGAbiolinks

datacamp /rdocumentation-2.0

📚 RDocumentation provides an easy way to search the documentation for every version of every R package on CRAN and Bioconductor.

heise3 /ExtremaRank

Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk

mixOmics-org /mixOmics

Development repository for the Bioconductor package 'mixOmics '

GoekeLab /bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data

sneumann /xcms

这是与Bioconductor包xcms匹配的git存储库：LC/MS和GC/MS数据分析

Oshlack /splatter

Simple simulation of single-cell RNA sequencing data

theislab /zellkonverter

Conversion between scRNA-seq objects

SingleR-inc /SingleR

Clone of the Bioconductor repository for the SingleR package.

mikelove /bioc-refcard

Bioconductor cheat sheet

tidyomics /tidybulk

Brings bulk and pseudobulk transcriptomics to the tidyverse

waldronlab /curatedMetagenomicData

Curated Metagenomic Data of the Human Microbiome

biobakery /Maaslin2

MaAsLin2: Microbiome Multivariate Association with Linear Models

tidyomics /plyranges

A grammar of genomic data transformation

theislab /anndata2ri

Convert between AnnData and SingleCellExperiment

Bioconductor /Contributions

Contribute Packages to Bioconductor

thelovelab /tximport

Transcript quantification import for modular pipelines