biobank 开源项目推荐（51 个）

marksgraham /OCT-Converter

Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.

molgenis /molgenis

MOLGENIS - for scientific data: management, exploration, integration and analysis.

kenhanscombe /ukbtools

操作和探索英国生物库数据的R包

hakyimlab /ukbrest

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

AberystwythSystemsBiology /limbus

LImBuS is an open source, standards compliant Biobank Information Management System developed by researchers from Aberystwyth University.

BBMRI-ERIC /negotiator

An Open-source access negotation system for Research Infrastructures

BBMRI-ERIC /miabis

The Minimum Information About BIobank data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of minimal biobank-related data for different purposes across a wide range of database implementations.

CBSR-Biobank /biobank

Biorepository application for tracking biospecimens.

rivas-lab /snpnet

snpnet - Efficient Lasso Solver for Large-scale genetic variant data

CBSR-Biobank /bbweb

Biobank Web Application

sammargolis /DrugTargetWorld

DrugTargetWorld: a synthetic biobank for training and benchmarking AI scientists on end-to-end drug target discovery. Paper: arXiv:2610.09558

ucfcbb /Recomb-Mix

Recomb-Mix: a local ancestry inference tool

TIBHannover /BacDiveR

Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.

BBMRI-ERIC /negotiator-frontend

The BBMRI-ERIC Negotiator is a service for structured negotiation with biological resources dealing with human data and/or biological samples. The reference implementation for the frontend is available in this repository.

hdg204 /Rdna-nexus

Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench

BBMRI-ERIC /negotiator-v2

The BBMRI-ERIC Negotiator service for structured negotiation with biological resources dealing with human data and/or biological samples.

samply /bbmri-fhir-ig

This is the source for the BBMRI.de / GBA Implementation Guide.

rivas-lab /multisnpnet-Cox

Multiresponse time-to-event Cox proportional hazards model - CPU

rivas-lab /multisnpnet-Cox_gpu

Multiresponse time-to-event Cox proportional hazards model - GPU

jlc-christie /axivity-ax3-tool

Command line tool written in c++ for easily extracting light and temperature data from Axivity AX3 accelerometers used in the UKBiobank