yeast 开源项目推荐（100 个）

hendricius /the-bread-code

Learn how to master the art of baking the programmer way.

hendricius /pizza-dough

这个食谱致力于帮助你做出最好的那不勒斯比萨饼面团。

Pioreactor /pioreactor

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

SysBioChalmers /yeast-GEM

The consensus GEM for Saccharomyces cerevisiae

yjx1217 /LRSDAY

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

chrisgilmerproj /brewday

Tools for the home brewer

Fafa87 /cellstar

Algorithm for round cells identification in the brightfield microscopy images.

BrewBuddyOrg /BrewBuddy

Brouwsoftware

LiLabTsinghua /Yeast-MetaTwin

The metabolic twin model of yeast

sboulema /BrewDB

SQLite database with beer brewing ingredients

irahorecka /sgd-rest

Saccharomyces Genome Database (SGD) REST API wrapper

SysBioChalmers /CellFactory-ecYeastGEM

Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.

dunhamlab /yEvoMutBrowser

该项目在 GitHub 上没有填写描述

sboulema /Hops

Website to show possible hop substitution

ChristophReich1996 /TYC-Dataset

Official and maintained implementation of the dataset paper "The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures" [ICCVW 2023].

CSB-KUL /yMap

An automated method to map yeast variants to proteins modifications and functional regions

SysBioChalmers /SLIMEr

Collection of scripts for improving lipid constraints in yeast-GEM

Daniyar1239 /DIY-Bioreactor

该项目在 GitHub 上没有填写描述

TomMakesThings /Genome-Sequence-Analysis-HMM

HMM for annotating coding regions of DNA in S. cerevisiae chromosome III

fg6 /YeastStrainsStudy

Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.