tcga-data 开源项目推荐（71 个）

mahmoodlab /CLAM

计算病理学开源工具- Nature BME

BioinformaticsFMRP /TCGAbiolinks

TCGAbiolinks

MarvinLer /tcga_segmentation

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

KatherLab /STAMP

Solid Tumor Associative Modeling in Pathology

PoisonAlien /TCGAmutations

R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE

sigven /oncoEnrichR

Explore the cancer relevance of your gene list

BioinformaticsFMRP /TCGAbiolinksGUI

TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/

rezacsedu /Multimodal-autoencoder-for-breast-cancer

Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data

waldronlab /MultiAssayWorkshop

Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment

KChen-lab /Texomer

Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data

mahmoodlab /CPATH_demographics

Demographic bias in misdiagnosis by computational pathology models - Nature Medicine

HuaZou /bioinformatics_pipeline

Bioinformatics Pipeline

MahShaaban /miRCancerdb

A database for microRNA-gene/protein expression correlation in cancer.

asmagen /SPAGEfinder

Computational approach to identify Survival associated Pairwise Gene Expression states.

mschubert /TCGAbiolinks-downloader

GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package

Eurus-Holmes /Tumor2Graph

Tumor2Graph: a novel Overall-Tumor-Profile-derived virtual graph deep learning for predicting tumor typing and subtyping.

onedimkurt /tcga-gdc-downloader

Download and annotate TCGA RNA-seq counts from the GDC portal

ShixiangWang /ImmuneDR

A Community Curated Immune Resource Database in R format

deargen /DearWXpub

a neural network-based feature selection algorithm for next-generation sequencing data

peterlipan /FoF

The official implementations of our BIBM'24 paper: Focus on Focus: Focus-oriented Representation Learning and Multi-view Cross-modal Alignment for Glioma Grading