taxonomy-database 开源项目推荐（15 个）

voorloopnul /pipetaxon

PipeTaxon exposes the ncbi taxonomy database as a REST API.

flefler /CyanoSeq

CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing

Rekyt /taxo_harmonization

📓 Companion code for Grenié et al. 2022 MEE "Harmonizing taxon names in biodiversity data: a review of tools, databases, and best practices" preprint: 10.32942/osf.io/e3qnz

CatalogueOfLife /checklistbank

UI for checklistbank.org

certtools /tag2domain

A mapping project between tags (annotations, labels) and domain names

qLSLab /ExTaxsI

Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic informations.

bio-org-au /services

Grails 3 port of NSL services

skchronicles /ReptileDB

Django web application that provides a catalogue of all living reptile species and their classification; currently there are more than 10,000 species including another 2,800 subspecies

handrews /phylohist

A CLI and MCP-compatible query engine and curated flat-file YAML database tracking historical, literature-based phylogenetic trees over time.

CAM-Initiative /Vigil

Governance SIEM for AI/platform/systemic failures

NiklasHohmann /messinian_db

Supplementary code for "A revised marine fossil record of the Mediterranean before and after the Messinian Salinity Crisis". Generates summary statistics, plots, and maps.

tracywong117 /NCBI-get-all-children-organism-under-ancestor

This Python script retrieve all children organism under an ancestor in NCBI taxonomy.

hsmurali /Transitive_Annotation

The impact of transitive annotation on the training of taxonomic classifiers

RoshniRanaDS27 /Belly_Button_Biodiversity_INTERACTIVE_DASHBOARD

INTERACTIVE DASHBOARD to explore the Belly Button Biodiversity datasetLinks to an external site., which catalogs the microbes that colonize human navels.

YoannPa /Designing_Organisms-Genomes_Database_in_OCaml

Design a pseudo database to link data on organisms and data on their genomes, all operating with recursive functions in OCaml.