scvi 开源项目推荐（12 个）

Project-PokeBots /SCVI_PokeManager

A PKHeX compatible dumper and injector for Pokémon Scarlet and Violet.

vitkl /regularizedvi

Regularized scVI for complex multiome single-cell/nucleus datasets: ambient RNA correction, dispersion prior, and batch-free decoder act as structural inductive biases that make large-architecture VAEs well-behaved without per-dataset tuning.

Project-PokeBots /px8parse

A PKX encryptor and decryptor

annus3 /scRNA-latent-AE

Benchmarking AE, VAE, and scVI autoencoders to predict optimal latent dimension from cell-type complexity (K) in single-cell RNA-seq, using a trust-aware evidence framework across 5 curated datasets from PBMC to atlas-scale.

ChengYu040204 /bonemarrowmap-sae

Sparse autoencoders on scVI latent space of the BoneMarrowMap haematopoietic atlas: functional programme discovery, RAG-LLM annotation, cross-lineage FP-Tree and progenitor commitment

OsmanjanTimtura /scrnaseq-tumor-microenvironment

Single-cell RNA-seq analysis of the Salcher 2022 LuCA lung cancer atlas — scanpy + scVI + LightGBM, leave-one-study-out CV

Bit-2310 /colorectal-singlecell-rnaseq-pipeline

Lightweight, GPU-accelerated single-cell RNA-seq workflow for exploring the colorectal tumor microenvironment (CRC-TME) using Scanpy and scVI.

drgideonobeng /Tbx1-depleted-Tbx1cre-lineage

Four-phase scRNA-seq pipeline characterizing Tbx1 conditional knockout in cardiopharyngeal progenitors. Nextflow DSL2 + Seurat + scVI + DESeq2 + clusterProfiler.

ds4cabs /OpenLineage

A stem-cell differentiation copilot for computational biology teams — CABS 2026 intern project.

jessicaongg /BIOX7014_Thesis

Single-cell RNA-seq and TCR repertoire analysis workflows for paediatric immune ageing using Scanpy, scVI, Milo and Dandelion.

richard2049 /RNA_seq_and_more

Public portfolio of reproducible bioinformatics and computational biology workflows developed for RNA-seq, single-cell analysis, ageing biology and systems biology projects. It includes my main immune-aging workflow. Selected subprojects include modular Snakemake pipelines, QC/reporting outputs and documented analysis workflows.

zhuy16 /scRNA-seq_reference-projection

Reproducible scRNA-seq reference projection pipeline for TIL cell type annotation, benchmarking CCA vs scVI/scANVI for immunotherapy-oriented analysis.