rna-seq-analysis 开源项目推荐（403 个）

theislab /scarches

单细胞基因组学的参考图谱

GoekeLab /bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data

GuyTeichman /RNAlysis

Analyze your RNA sequencing data without writing a single line of code

bigomics /omicsplayground

Visual self-service analytics platform for big omics data.

Dragonmasterx87 /Interactive-3D-Plotting-in-Seurat-3.0.0

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

MaayanLab /Zika-RNAseq-Pipeline

An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

nunofonseca /irap

integrated RNA-seq Analysis Pipeline

federicomarini /GeneTonic

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

broadinstitute /single_cell_portal_core

Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

nellore /rail

Scalable RNA-seq analysis

junchaoshi /sports1.1

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

federicomarini /pcaExplorer

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

broadinstitute /single_cell_portal

Tutorials, workflows, and convenience scripts for Single Cell Portal

jumphone /SPRINT

SNP-free RNA editing Identification Toolkit

uc-bd2k /GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator

pmartR /pmartR

The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.

govinda-kamath /clustering_on_transcript_compatibility_counts

Clustering cells from single cell RNA seq assays

smangul1 /rop

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

federicomarini /ideal

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

nf-core /lncpipe

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets