plastome 开源项目推荐（15 个）

Kinggerm /GetOrganelle

细胞器基因组组装工具包（叶绿体/线粒体/ITS）

quxiaojian /PGA

Plastid Genome Annotator

aiPGAB /PMAT2

Organellar genome assembly

tomas-fer /HybPhyloMaker

Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)

cmayer /MitoGeneExtractor

The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.

quxiaojian /OGA

Organelle Genome Assembler

stromviklab /plastaumatic

Automated pipeline for assembly and annotation of plastid genomes

JianjunJin /Arachis

该项目在 GitHub 上没有填写描述

quxiaojian /get_cp_and_mt_genes_from_contigs_of_genome-skimming_or_transcriptome_data

get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data

alexisbourdais /ChloroBras

Chloroplast genome assembly, annotation and phylogenetic relationships of different populations of flowering plants

maidinhvn /plastanno

Chloroplast genome (plastome) annotation from a FASTA: CDS, tRNA and rRNA, with GenBank/GFF3/FASTA output, per-feature provenance and a circular map.

satuankecepatan /global-rice-popgen

Population genomics, maternal plastid phylogeography, and cytonuclear discordance across global rice (Oryza sativa) germplasm.

WangSoybean /Chrysanthemum-nankingense-mitogenome

该项目在 GitHub 上没有填写描述

PherisN /cpDNABarcoder

R package for extracting chloroplast DNA barcode markers from GenBank plastomes, including rbcL, matK, and psbA-trnH.

AngeloGith /ECuADOR

Chloroplast genome structural region extractor (LSC/IRa/SSC/IRb) — published in PeerJ 2020