phylogenetic-trees 开源项目推荐（229 个）

moshi4 /pyCirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

YuLab-SMU /ggtree

🎄Visualization and annotation of phylogenetic trees

ponnhide /pyCircos

python Circos

veg /phylotree.js

Interactive viewer of phylogenetic trees

biobakery /phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

cogent3 /cogent3

Comparative Genomics Toolkit 3

biobakery /graphlan

High-quality circular representations of taxonomic and phylogenetic trees

CDCgov /MicrobeTrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

YuLab-SMU /treeio

🌱 Base Classes and Functions for Phylogenetic Tree Input and Output

shawnlaffan /biodiverse

A tool for the spatial analysis of diversity

caravagnalab /revolver

Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data

moshi4 /phyTreeViz

Simple phylogenetic tree visualization python package for phylogenetic analysis

lczech /genesis

A library for working with phylogenetic and population genetic data.

LKremer /CAFE_fig

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

vibbits /phyd3

Phylogenetic tree viewer based on D3.js

vinuesa /get_phylomarkers

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

agmcfarland /r_phylogenetics_worshop

Using ggtree to build phylogenetic trees

cmzmasek /archaeopteryx-js

Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.

cmzmasek /forester

forester is a collection of open-source libraries and tools for genomics and evolutionary biology research. It includes the tree viewer Archaeopteryx.

ms609 /TreeDist

Calculate distances between phylogenetic trees in R