nanopore-reads 开源项目推荐（7 个）

CMU-SAFARI /RawHash

RawHash 能够实时准确高效地将原始纳米孔信号映射到不同大小的参考基因组（例如从病毒到人类基因组），无需碱基调用。由 Firtina 等人描述（发表于 https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440 年）。

ImagoXV /NanoASV

NanoASV official repo

masikol /barapost

A toolkit for binning FASTA, FASTQ and FAST5 files according to taxonomic annotation

patrikjurica /bambam

My bachelor thesis, BAM filter that keeps just the highest confidence reads, written in Rust and completely opensource!

will-gebbie /long-read-fermentation-viability-pipeline

Snakemake pipeline for bacterial culture QC: flow cytometry cell counts, Cellpose microscopy viability, strain abundance from nanopore reads via expectation-maximization (EM), and Kraken2 contamination screening.

dlaehnemann /create-ecdna-testing-data

A Snakemake workflow for creating testing data for ecDNA analysis workflows: long reads (Nanopore with NanoSim) and short reads (Illumina with seqkit and mason).

griceyrt /Internship

Internship project on Alternative Splicing analysis in circadian rhythm context using SUPPA2 on mouse RNA-seq data (GRCm39). Comparing strict vs variable boundary modes across CT8, CT20 and PerKO conditions.