nanopore-analysis-pipeline 开源项目推荐（35 个）

biocorecrg /master_of_pores

Nextflow pipeline for analysis of direct RNA Nanopore reads

CMU-SAFARI /RawHash

RawHash 能够实时准确高效地将原始纳米孔信号映射到不同大小的参考基因组（例如从病毒到人类基因组），无需碱基调用。由 Firtina 等人描述（发表于 https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440 年）。

gaolabtools /scNanoGPS

Single cell Nanopore sequencing data for Genotype and Phenotype

BeatsonLab-MicrobialGenomics /micropipe

A pipeline for high-quality bacterial genome construction using ONT sequencing

lsmo-epfl /zeopp-lsmo

zeo++ fork of the LSMO

ImagoXV /NanoASV

NanoASV official repo

cdelahaye /SeqFaiLR

Analysis of sequencing error profile for long read data.

CarolinaPB /nanopore-assembly

Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads

renatosantos98 /ont-benchmark

Supporting data for the publication "Investigating the performance of Oxford Nanopore long-read sequencing with respect to Illumina microarrays and short-read sequencing"

leenput /ECHO-pipeline

ECHO: a pipeline to analyse the human repeatome using Oxford Nanopore Technologies (ONT) long-read sequencing data, written in Snakemake

HKU-BAL /ONT-TB-NF

Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.

nunofonseca /msi

该项目在 GitHub 上没有填写描述

areebapatel /Rapid-CNS2

Rapid comprehensive adaptive nanopore-sequencing of CNS tumours set-up and analysis pipeline

baynec2 /nanopore_pipelines

Nanopore sequencing experimental protocols and computational pipelines

Nirmal2310 /NANOTAXI

An End-to-End GUI for real-time taxon identification via barcoded nanopore amplicon sequencing data. The pipeline is built using R Shiny library and majorly targets users with minimal coding background. Users can get from sequencing to results in a few clicks.

shubhamchandak94 /lossy_compression_evaluation

Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy

STTLab /HIV-64148

HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.

AndreHolzer /PuntSeq

PuntSeq - Chasing the microbial diversity of Cambridge's freshwater

Meadowlion /LM_ToolKit

This is just small command line pipeline to simplify going from ONT Unbasecalled data using Guppy to Assembly using Flye, all of the tools are existing tools.

TCossaLab /poriscope

An extensible plugin-based analysis framework for nanopore data