mitogenome 开源项目推荐（18 个）

Kinggerm /GetOrganelle

细胞器基因组组装工具包（叶绿体/线粒体/ITS）

RemiAllio /MitoFinder

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data

aiPGAB /PMAT2

Organellar genome assembly

cmayer /MitoGeneExtractor

The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.

NMNH-OceanDNA /MitoPilot

An R package for mitogenome assembly and annotation from genome skimming data that uses Nexflow and includes (Shiny) web app for project management and final curation of results

kevinkarbstein /GenomeXtract

Automatically download, compare, and assemble genomes from NCBI

RhettRautsaw /MitoSIS

MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.

sihellem /TER-MT-DB

The Termite Mitogenome Database. Centralization of termite mitogenomes and assignation of unique identification code.

gavieira /mitofree

Automated mitochondrial genome assembly using SRA public data

oscar-pizzoli /amtdna-variant-pipeline

Bioinformatic pipeline for the characterization of mt-DNA and amt-DNA.

charlesfoster /mitowrap

A snakemake pipeline wrapping MitoZ and getOrganelle for de novo mitogenome assembly using short reads and subsequent QC.

avvypaks /GenGrab

Extraction of gene segments from genomes according to your gene boundary and genome dataset preparation

lucaspalmeira /mitogenome-assembly-workflow

Python workflow for mitochondrial genome assembly, read enrichment, circularity assessment, and curation from Illumina and PacBio data.

sihellem /TERmitoGENOMES

Repository for mitogenome assembly and annotation in termites.

hempelc /mitogenome_assembly_evaluation

Comparing and evaluating mitogenome assemblers

rcac-bioinformatics /mitoforge

Assemble, circularise and annotate animal mitochondrial genomes from PacBio HiFi or Illumina paired-end reads

WangSoybean /Chrysanthemum-nankingense-mitogenome

该项目在 GitHub 上没有填写描述

michaelgruenstaeudl /DataMining_HumanMitoGenomes

Pipeline for data mining on human mitochondrial genome data