long-read 话题在 GitHub 上没有填写简介，这里按 Star 数汇总最相关的热门仓库。
simple web-based, free and open-source visual novel editor that can be used in a web browser. It is written in JavaScript without using any third party libraries and thus does not require additional software installation. The engine uses standard HTML document elements such as div and img.
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
SALSA: A tool to scaffold long read assemblies with Hi-C data
Toolkit for calling structural variants using short or long reads
A Python library to visualize and analyze long-read transcriptomes
BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
Fast and space-efficient taxonomic classification of long reads
Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
Suite of tools for use in genome assembly and consensus. Work in progress.
Extract methylation calls from long reads (ONT/ PacBio)
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
Analyse RNA feature distributions.
Merge transcriptome read-to-genome alignments into non-redundant transcript models
Longread PacBio sequencing processing for WGS and PureTarget
Minor Variant Calling and Phasing Tools
HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high-fidelity (HiFi) reads or Circular Consensus Sequencing (ccs) data, to a reference genome (i.e., the hypothetical master cycle DNA).
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data, utilizing a ResNet50 model.
A lightweight wrapper to run minimap2 (v2.30) alignments directly on BAM file