interactomics 开源项目推荐（15 个）

a-r-j /graphein

蛋白质图库

hgb-bin-proteomics /pyXLMS

A python package to process protein cross-linking data.

catabia /inter-tools

该项目在 GitHub 上没有填写描述

hgb-bin-proteomics /pyXLMS-pydantic

Pydantic version of pyXLMS [merged into main pyXLMS in v2.0.0]

AndreaRubbi /pdb_parser

Python program that can identify the residues interacting between chains of a complex protein.

michabirklbauer /pyXLMS-docs

A comprehensive user guide for pyXLMS built with Nextra.

RadTech-Solutions /msvolcano

msVolcano: client-side volcano plots for MaxQuant interactomics data (Proteomics 2016)

AndreaRubbi /dssp_parser

Python program which is able to analyse dssp files in order to estimate the interacting area and interacting residues between monomers of a complex protein

hgb-bin-proteomics /pyXLMS-manuscript

Results, figures, and code for the manuscript of pyXLMS.

hgb-bin-proteomics /pyXLMS-docs

A comprehensive user guide for pyXLMS built with Nextra.

Giu-F /JAG1-RIME-proteomics

Reproducible R/Quarto workflow for the analysis of the JAG1-ICD RIME-DIA proteomics dataset.

hgb-bin-proteomics /pyXLMS-app

Link to the web application for pyXLMS.

hgb-bin-proteomics /pyXLMS-template

A template repository for python scripts and projects using pyXLMS.

luizdione /Platform_Analysis_CoIP-MS-AP-MS

Local platform (browser + Docker) for CoIP-MS / AP-MS analysis and identification of protein-protein interaction partners in the mouse proteome (Mus musculus, taxid 10090). Orchestrates published proteomics tools in reproducible containers. Contains no experimental data.

doramarcec /RP1

First-trimester single-cell RNA-seq analysis, followed by the hypergraph analysis to assess network topology as a marker of function.