bioinformatics-scripts 开源项目推荐（252 个）

HuffordLab /NAM-genomes

Detailed bioinformatics scripts and methods used in the NAM genome paper.

widdowquinn /find_differential_primers

Code for design of diagnostic PCR primers, and metabarcoding markers.

bystrogenomics /bystro

Natural Language Search and Analysis of High Dimensional Genomic Data

flystar233 /pyscript-bio

生物信息学python代码，专注于重测序文本计算、处理

brianyiktaktsui /Skymap

High-throughput gene to knowledge mapping through massive integration of public sequencing data.

vinuesa /TIB-filoinfo

Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

fomightez /sequencework

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

dvklopfenstein /ReactomePy

Explore biomolecular pathways in Reactome from the command-line or a Python script

Sydney-Informatics-Hub /Bioinformatics

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.

robinvanderlee /positive-selection

Scripts and procedures for detecting positively selected genes and codons in primates

onedimkurt /rnaseq-hoxa1-knockdown-pipeline

A complete, reproducible bulk RNA-seq pipeline from raw FASTQ files to differential gene expression — built on a real published dataset, with every command tested and verified on macOS.

SouthGreenPlatform /GeMo

A mosaic genome painting tool for plant genomes

johnnytam100 /pdb2uniprot

A Python script to map PDB ID + chain ID to UniProt ID.

pwwang /biopipen

A set of processes/pipelines for bioinformatics

alvesrco /pipecov

This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid…

tomarovsky /Biocrutch

Various bioinformatics scripts

ramsainanduri /split_multi_fasta

Split multi fasta file into single fasta files

lazappi /binf-scripts

A collection of useful bioinformatics scripts.

fomightez /pdbepisa-binder

Using data from PDBePISA with the convenience of Python and Jupyter.

ulelab /peka

Find motifs enriched around prominent crosslinks