sqlitebiter

… contents:: sqlitebiter :backlinks: top :depth: 2

Summary

sqlitebiter <https://github.com/thombashi/sqlitebiter>__ is a CLI tool to convert CSV / Excel / HTML / JSON / Jupyter Notebook / LDJSON / LTSV / Markdown / SQLite / SSV / TSV / Google-Sheets to a SQLite database file.

|PyPI pkg ver| |Supported Python ver| |CI status| |CodeQL|

… |PyPI pkg ver| image:: https://badge.fury.io/py/sqlitebiter.svg :target: https://badge.fury.io/py/sqlitebiter :alt: PyPI package version

… |Supported Python ver| image:: https://img.shields.io/pypi/pyversions/sqlitebiter.svg :target: https://pypi.org/project/sqlitebiter :alt: Supported Python versions

… |CI status| image:: https://github.com/thombashi/sqlitebiter/actions/workflows/tests.yml/badge.svg :target: https://github.com/thombashi/sqlitebiter/actions/workflows/tests.yml :alt: CI status of Linux/macOS/Windows

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Features

• Create a SQLite database file from:
  • File(s):
    • CSV / Tab separated values (TSV) / Space separated values (SSV)
    • Microsoft Excel :superscript:TM
    • HTML
    • JSON
      • See also: Limitations of JSON conversion <https://sqlitebiter.readthedocs.io/en/latest/pages/usage/limitations.html>_
    • Jupyter Notebook <https://jupyter.org/>__
    • Labeled Tab-separated Values (LTSV) <http://ltsv.org/>__
    • Line-delimited JSON(LDJSON) <https://en.wikipedia.org/wiki/JSON_streaming#Line-delimited_JSON>__ / NDJSON / JSON Lines
    • Markdown
    • Mediawiki
    • SQLite
  • Google Sheets <https://www.google.com/intl/en_us/sheets/about/>_
  • URL (scrape tabular data from web pages)
• Multi-byte character support
• Automatic file encoding detection

Usage

Create SQLite database from files

… image:: https://cdn.jsdelivr.net/gh/thombashi/sqlitebiter@master/docs/svg/usage_example.svg

Create SQLite database from URL

Following is an example that converts HTML table tags within a web page to SQLite tables by the web page URL.

:Example: … code-block:: console

    $ sqlitebiter url "https://en.wikipedia.org/wiki/Comparison_of_firewalls"
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html1' table
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html2' table
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html3' table
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html4' table
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html5' table
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html6' table
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html7' table
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html8' table
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html9' table
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html10' table
    [INFO] sqlitebiter url: convert 'Comparison_of_firewalls' to 'Comparison_of_firewalls_Wikipedia_html11' table
    [INFO] sqlitebiter url: converted results: source=1, success=11, created-table=11
    [INFO] sqlitebiter url: database path: out.sqlite

:Output: … code-block:: sql

    $ sqlite3 out.sqlite .schema
    CREATE TABLE IF NOT EXISTS '_source_info_' ("source_id" INTEGER NOT NULL, "dir_name" TEXT, "base_name" TEXT NOT NULL, "format_name" TEXT NOT NULL, "dst_table" TEXT NOT NULL, size INTEGER, mtime INTEGER);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html1' (Firewall TEXT, License TEXT, [Cost and usage limits] TEXT, OS TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html2' (Firewall TEXT, License TEXT, Cost TEXT, OS TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html3' ([Can Target:] TEXT, [Changing default policy to accept/reject (by issuing a single rule)] TEXT, [IP destination address(es)] TEXT, [IP source address(es)] TEXT, [TCP/UDP destination port(s)] TEXT, [TCP/UDP source port(s)] TEXT, [Ethernet MAC destination address] TEXT, [Ethernet MAC source address] TEXT, [Inbound firewall (ingress)] TEXT, [Outbound firewall (egress)] TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html4' ([Can:] TEXT, [work at OSI Layer 4 (stateful firewall)] TEXT, [work at OSI Layer 7 (application inspection)] TEXT, [Change TTL? (Transparent to traceroute)] TEXT, [Configure REJECT-with answer] TEXT, [DMZ (de-militarized zone) - allows for single/several hosts not to be firewalled.] TEXT, [Filter according to time of day] TEXT, [Redirect TCP/UDP ports (port forwarding)] TEXT, [Redirect IP addresses (forwarding)] TEXT, [Filter according to User Authorization] TEXT, [Traffic rate-limit / QoS] TEXT, Tarpit TEXT, Log TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html5' ([Features:] TEXT, "Configuration: GUI_ text or both modes?" TEXT, "Remote Access: Web (HTTP)_ Telnet_ SSH_ RDP_ Serial COM RS232_ ..." TEXT, [Change rules without requiring restart?] TEXT, [Ability to centrally manage all firewalls together] TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html6' ([Features:] TEXT, [Modularity: supports third-party modules to extend functionality?] TEXT, [IPS : Intrusion prevention system] TEXT, [Open-Source License?] TEXT, [supports IPv6 ?] TEXT, [Class: Home / Professional] TEXT, [Operating Systems on which it runs?] TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html7' ([Can:] TEXT, "NAT44 (static_ dynamic w/o ports_ PAT)" TEXT, "NAT64_ NPTv6" TEXT, [IDS (Intrusion Detection System)] TEXT, [VPN (Virtual Private Network)] TEXT, [AV  (Anti-Virus)] TEXT, Sniffer TEXT, [Profile selection] TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html8' ([vteFirewall software] TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html9' (A TEXT, B TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html10' (A TEXT, B TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html11' (A TEXT, B TEXT);

The attributes within the converted SQLite database may include symbols as the above. Symbols within attributes can be replaced by using --replace-symbol option. The following example shows replacing symbols with underscores.

:Example: … code-block:: console

    $ sqlitebiter --replace-symbol _ -q url "https://en.wikipedia.org/wiki/Comparison_of_firewalls"

:Output: … code-block:: sql

    $ sqlite3 out.sqlite .schema
    CREATE TABLE IF NOT EXISTS '_source_info_' ("source_id" INTEGER NOT NULL, "dir_name" TEXT, "base_name" TEXT NOT NULL, "format_name" TEXT NOT NULL, "dst_table" TEXT NOT NULL, size INTEGER, mtime INTEGER);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html1' (Firewall TEXT, License TEXT, "Cost_and_usage_limits" TEXT, OS TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html2' (Firewall TEXT, License TEXT, Cost TEXT, OS TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html3' ("Can_Target" TEXT, "Changing_default_policy_to_accept_reject_by_issuing_a_single_rule" TEXT, "IP_destination_address_es" TEXT, "IP_source_address_es" TEXT, "TCP_UDP_destination_port_s" TEXT, "TCP_UDP_source_port_s" TEXT, "Ethernet_MAC_destination_address" TEXT, "Ethernet_MAC_source_address" TEXT, "Inbound_firewall_ingress" TEXT, "Outbound_firewall_egress" TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html4' (Can TEXT, "work_at_OSI_Layer_4_stateful_firewall" TEXT, "work_at_OSI_Layer_7_application_inspection" TEXT, "Change_TTL_Transparent_to_traceroute" TEXT, "Configure_REJECT_with_answer" TEXT, "DMZ_de_militarized_zone_allows_for_single_several_hosts_not_to_be_firewalled" TEXT, "Filter_according_to_time_of_day" TEXT, "Redirect_TCP_UDP_ports_port_forwarding" TEXT, "Redirect_IP_addresses_forwarding" TEXT, "Filter_according_to_User_Authorization" TEXT, "Traffic_rate_limit_QoS" TEXT, Tarpit TEXT, Log TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html5' (Features TEXT, "Configuration_GUI_text_or_both_modes" TEXT, "Remote_Access_Web_HTTP_Telnet_SSH_RDP_Serial_COM_RS232" TEXT, "Change_rules_without_requiring_restart" TEXT, "Ability_to_centrally_manage_all_firewalls_together" TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html6' (Features TEXT, "Modularity_supports_third_party_modules_to_extend_functionality" TEXT, "IPS _Intrusion_prevention_system" TEXT, "Open_Source_License" TEXT, "supports_IPv6" TEXT, "Class_Home_Professional" TEXT, "Operating_Systems_on_which_it_runs" TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html7' (Can TEXT, "NAT44_static_dynamic_w_o_ports_PAT" TEXT, "NAT64_NPTv6" TEXT, "IDS_Intrusion_Detection_System" TEXT, "VPN_Virtual_Private_Network" TEXT, "AV_Anti_Virus" TEXT, Sniffer TEXT, "Profile_selection" TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html8' ("vteFirewall_software" TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html9' (A TEXT, B TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html10' (A TEXT, B TEXT);
    CREATE TABLE IF NOT EXISTS 'Comparison_of_firewalls_Wikipedia_html11' (A TEXT, B TEXT);

Create SQLite database from stdin

Examples

A data format is a mandatory argument for sqlitebiter ``stdin subcommand``:

:Example:
    .. code-block:: console

        $ echo '[{"hoge": 4, "foo": "abc"}, {"hoge": 12, "foo": "xyz"}]' | sqlitebiter stdin json
        [INFO] convert 'stdin' to 'json1' table
        [INFO] converted results: source=1, success=1, created-table=1
        [INFO] database path: out.sqlite

Command help
--------------
::

    Usage: sqlitebiter [OPTIONS] COMMAND [ARGS]...

    Options:
      -o, --output-path PATH          Output path of the SQLite database file.
                                      [default: out.sqlite]
      -a, --append                    Append table(s) to existing database.
      --add-primary-key PRIMARY_KEY_NAME
                                      Add 'PRIMARY KEY AUTOINCREMENT' column to a
                                      converted table with the specified name.
      --convert-config TEXT           [experimental] Configurations for data
                                      conversion. The option can be used only for
                                      url subcommand.
      -i, --index INDEX_ATTR          Comma separated attribute names to create
                                      indices.
      --no-type-inference             All of the columns assume as TEXT data type
                                      in creating tables.
      --type-hint-header              Use header suffixes as type hints. If there
                                      are type hints, convert columns by datatype
                                      corresponding with type hints. The following
                                      suffixes can be recognized as type hints
                                      (case insensitive): "text": TEXT datatype.
                                      "integer": INTEGER datatype. "real": REAL
                                      datatype.
      --matrix-formatting [header_aligned|trim]
                                      header_aligned: fitting table data to header
                                      columns. trim: fitting table data to minimum
                                      column size.  [default: header_aligned]
      --replace-symbol TEXT           Replace symbols in attributes.
      -v, --verbose                   Verbosity level.  [default: 0]
      --max-workers WORKERS           Specify the maximum number of workers that
                                      the command may use.  [default: 1]
      --debug                         For debug print.
      -q, --quiet                     Suppress execution log messages.
      -h, --help                      Show this message and exit.

    Commands:
      completion  A helper command to setup command completion.
      configure   Configure the following application settings:
      file        Convert tabular data within CSV/Excel/HTML/JSON/Jupyter...
      gs          Convert a spreadsheet in Google Sheets to a SQLite database...
      stdin       Convert tabular data within CSV/HTML/JSON/Jupyter...
      url         Scrape tabular data from a URL and convert data to a SQLite...
      version     Show version information

For more information

More examples are available at https://sqlitebiter.rtfd.io/en/latest/pages/usage/index.html

Installation

Installation: pip (Python package manager)

::

pip install sqlitebiter

Installation: apt

You can install the package by apt via a Personal Package Archive (PPA <https://launchpad.net/~thombashi/+archive/ubuntu/ppa>__):

::

sudo add-apt-repository ppa:thombashi/ppa
sudo apt update
sudo apt install sqlitebiter

Installation: dpkg (.deb package)

The following commands will download the latest .deb package from the release page <https://github.com/thombashi/sqlitebiter/releases>__, and install it.

::

curl -sSL https://raw.githubusercontent.com/thombashi/sqlitebiter/master/scripts/installer.sh | sudo bash

Installation: Windows

sqlitebiter can be used in Windows environments without Python installation as follows:

#. Navigate to https://github.com/thombashi/sqlitebiter/releases #. Download the latest version of the sqlitebiter_windows_amd64.zip #. Unzip the file #. Execute sqlitebiter.exe in either Command Prompt or PowerShell

Installation: Windows (PowerShell)

The following commands will download the latest execution binary from the release page <https://github.com/thombashi/sqlitebiter/releases>__ to the current directory.

::

wget https://github.com/thombashi/sqlitebiter/raw/master/scripts/get-sqlitebiter.ps1 -OutFile get-sqlitebiter.ps1
Set-ExecutionPolicy Unrestricted -Scope Process -Force; .\get-sqlitebiter.ps1

Installation: brew for macOS

… code:: console

$ brew tap thombashi/sqlitebiter
$ brew install sqlitebiter

• Homebrew Formula <https://github.com/thombashi/homebrew-sqlitebiter>__

Command Completion (bash/zsh)

… code:: console

setup command completion for bash:

    sqlitebiter completion bash >> ~/.bashrc

setup command completion for zsh:

    sqlitebiter completion zsh >> ~/.zshrc

Dependencies

Python 3.7+

Python package dependencies

• Mandatory dependencies (automatically installed) <https://github.com/thombashi/DateTimeRange/network/dependencies>__

Google Sheets dependencies (Optional)

Extra Python packages are required to install to use the Google Sheets feature (`gs` subcommand):

- `gspread <https://github.com/burnash/gspread>`_
- `oauth2client <https://github.com/google/oauth2client/>`_
- `pyOpenSSL <https://pyopenssl.readthedocs.io/en/stable/>`_

The extra packages can be installed with the following `pip` command;

.. code:: console

    $ pip install sqlitebiter[gs]

note: binary packages include these dependencies

Misc dependencies (Optional)

• lxml <https://lxml.de/installation.html>__
• pypandoc <https://github.com/bebraw/pypandoc>__
  • required when converting MediaWiki files

Dependencies other than Python packages (Optional)

• libxml2 (faster HTML/Markdown conversion)
• pandoc <https://pandoc.org/>__ (required when converting MediaWiki files)

Documentation

https://sqlitebiter.rtfd.io/

Sponsors

|chasbecker| |shiguredo| |b4tman| |Arturi0| |github|

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Become a sponsor <https://github.com/sponsors/thombashi>__