A Python library for coordinate- and image-based meta-analysis.
Currently, NiMARE implements a range of image- and coordinate-based meta-analytic algorithms,
as well as several methods for advanced meta-analytic methods,
like automated annotation and functional decoding.
If you are interested in using a GUI to curate and perform large-scale meta-analyses along the lines of Neurosynth,
we recommend checking out Neurosynth-Compose.
Neurosynth-Compose is a web application that takes over for Neurosynth,
allowing users to search across the literature and build large meta-analytic datasets,
which can then be analyzed with NiMARE.
Installation
Please see our installation instructions
for information on how to install NiMARE.
Installation with pip
pip install nimare
Local installation (development version)
pip install git+https://github.com/neurostuff/NiMARE.git
Citing NiMARE
If you use NiMARE in your research, we recommend citing the Zenodo DOI associated with the NiMARE version you used,
as well as the Aperture Neuro journal article for the NiMARE Jupyter book.
You can find the Zenodo DOI associated with each NiMARE release at https://zenodo.org/record/6642243#.YqiXNy-B1KM.
# This is the Aperture Neuro paper.
@article{Salo2023,
doi = {10.52294/001c.87681},
url = {https://doi.org/10.52294/001c.87681},
year = {2023},
volume = {3},
pages = {1 - 32},
author = {Taylor Salo and Tal Yarkoni and Thomas E. Nichols and Jean-Baptiste Poline and Murat Bilgel and Katherine L. Bottenhorn and Dorota Jarecka and James D. Kent and Adam Kimbler and Dylan M. Nielson and Kendra M. Oudyk and Julio A. Peraza and Alexandre Pérez and Puck C. Reeders and Julio A. Yanes and Angela R. Laird},
title = {NiMARE: Neuroimaging Meta-Analysis Research Environment},
journal = {Aperture Neuro}
}
# This is the Zenodo citation for version 0.0.11.
@software{salo_taylor_2022_5826281,
author = {Salo, Taylor and
Yarkoni, Tal and
Nichols, Thomas E. and
Poline, Jean-Baptiste and
Kent, James D. and
Gorgolewski, Krzysztof J. and
Glerean, Enrico and
Bottenhorn, Katherine L. and
Bilgel, Murat and
Wright, Jessey and
Reeders, Puck and
Kimbler, Adam and
Nielson, Dylan N. and
Yanes, Julio A. and
Pérez, Alexandre and
Oudyk, Kendra M. and
Jarecka, Dorota and
Enge, Alexander and
Peraza, Julio A. and
Laird, Angela R.},
title = {neurostuff/NiMARE: 0.0.11},
month = jan,
year = 2022,
publisher = {Zenodo},
version = {0.0.11},
doi = {10.5281/zenodo.5826281},
url = {https://doi.org/10.5281/zenodo.5826281}
}
To cite NiMARE in your manuscript, we recommend something like the following:
We used NiMARE v0.0.11 (RRID:SCR_017398; Salo et al., 2022a; Salo et al., 2022b).
Contributing
Please see our contributing guidelines
for more information on contributing to NiMARE.
We ask that all contributions to NiMARE respect our code of conduct.
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