happykhan/BRIG：一款跨平台（Windows/Mac/Linux）应用程序，使

GNU General Public License v3.0

项目介绍

happykhan/BRIG 是一个托管在 GitHub 上的开源项目，主要使用 Java 编写，采用 GNU General Public License v3.0 许可证，目前获得 54 个 Star、9 次 Fork。

仓库全名: happykhan/BRIG
开源许可证: GNU General Public License v3.0
Star 数: 54
Fork 数: 9

README 摘要

BRIG - BLAST Ring Image Generator BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST. It is designed to handle genome assembly data and can show similarity, coverage, annotations and more as concentric rings around a reference sequence. Quick Start Download and run 1. Download BRIG.jar from the latest release, or download a native…

完整内容见 GitHub 原始 README 或本页。

常见问题

BRIG 用什么语言开发？

主要使用 Java 编写，采用 GNU General Public License v3.0 许可证，目前有 54 个 Star。

BRIG 可以免费商用吗？

仓库标注的许可证为 GNU General Public License v3.0，商用前请先阅读仓库 LICENSE 文件确认授权范围。

如何获取 BRIG 的源码？

可以直接克隆仓库：git clone https://github.com/happykhan/BRIG.git，默认分支为 master；安装与运行步骤见仓库 README。

BRIG 最近还在维护吗？

仓库最近一次更新为 7月1日，当前没有未关闭的 Issue；Star 数为 54，可作为社区活跃度的参考。

关于

GitHub 原始描述（英文）

BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.

描述取自 GitHub 官方 API，保持仓库作者书写的原文。

简要分析

热度分

价值分

活跃状态

活跃

bioinformatics blast comparative-genomics genome-analysis genomics java microbiology visualization

GitHub

语言占比

CSS

HTML

Java

JavaScript

Perl

Shell

Release

v1.1.14月4日
v1.0.02月23日

贡献者

happykhan

dependabot[bot]

README

BRIG - BLAST Ring Image Generator

SourceForge Downloads

BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST. It is designed to handle genome assembly data and can show similarity, coverage, annotations and more as concentric rings around a reference sequence.

BRIG example image

Quick Start

Download and run

Download BRIG.jar from the latest release, or download a native installer (DMG for macOS, MSI for Windows)
Double-click BRIG.jar to launch the GUI, or run from the command line:

java -Xmx1500M -jar BRIG.jar

BRIG will automatically download BLAST+ if it is not found on your system.

CLI Usage

BRIG also ships a separate CLI JAR for headless/scripted use:

java -jar brig-cli.jar <reference.fasta> <sequence_folder> --output output.png

See the CLI Usage documentation for full details and options.

Features

Circular comparison images with concentric rings showing BLAST similarity
Automatic BLAST comparisons and file parsing via GUI or CLI
Contig boundaries and read coverage display for draft genomes
Custom graphs and annotations (GenBank, EMBL, tab-delimited)
Gene presence/absence/truncation analysis using multi-FASTA references
SAM file support for read-mapping comparisons
Auto-download of BLAST+ binaries
Native macOS and Windows installers

Documentation

Full documentation is available at happykhan.github.io/BRIG.

Citation

If you use BRIG in your research, please cite:

NF Alikhan, NK Petty, NL Ben Zakour, SA Beatson (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics, 12:402. doi: 10.1186/1471-2164-12-402

BibTeX:

@article{alikhan2011brig,
  title={BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons},
  author={Alikhan, Nabil-Fareed and Petty, Nicola K and Ben Zakour, Nouri L and Beatson, Scott A},
  journal={BMC Genomics},
  volume={12},
  pages={402},
  year={2011},
  doi={10.1186/1471-2164-12-402}
}

License

Contributing

Contributions are welcome! See CONTRIBUTING.md for details.

BRIG