Artistic License 2.0

项目介绍

CNAG-Biomedical-Informatics/omop-csv-validator 是一个托管在 GitHub 上的开源项目,主要使用 Perl 编写,采用 Artistic License 2.0 许可证,目前获得 2 个 Star、0 次 Fork。

仓库全名
CNAG-Biomedical-Informatics/omop-csv-validator
开源许可证
Artistic License 2.0
Star 数
2

README 摘要

Validate OMOP CDM CSV exports before database ingestion OMOP CSV Validator OMOP CSV Validator checks the columns, nulls, and scalar values in an OMOP CDM CSV export before the file is loaded into a database. It derives the validation rules from PostgreSQL OMOP DDL, so ETL development can use the same table definitions as the target database. 📘 Documentation…

完整内容见 GitHub 原始 README 或本页 。

常见问题

omop-csv-validator 用什么语言开发?

主要使用 Perl 编写,采用 Artistic License 2.0 许可证,目前有 2 个 Star。

omop-csv-validator 可以免费商用吗?

仓库标注的许可证为 Artistic License 2.0,商用前请先阅读仓库 LICENSE 文件确认授权范围。

如何获取 omop-csv-validator 的源码?

可以直接克隆仓库:git clone https://github.com/CNAG-Biomedical-Informatics/omop-csv-validator.git,默认分支为 main;安装与运行步骤见仓库 README。

omop-csv-validator 最近还在维护吗?

仓库最近一次更新为 5月29日,当前没有未关闭的 Issue;Star 数为 2,可作为社区活跃度的参考。

关于

GitHub 原始描述(英文)

The OMOP CSV Validator is a CLI tool that validates CSV files against JSON schemas generated from OMOP Common Data Model (CDM) DDL fiiles

描述取自 GitHub 官方 API,保持仓库作者书写的原文。

简要分析

热度分
3
价值分
1
活跃状态
活跃

语言占比

Dockerfile
Perl

贡献者

README

OMOP CSV Validator

Validate OMOP CDM CSV exports before database ingestion

Build and test Documentation CPAN version Coverage License

OMOP CSV Validator

OMOP CSV Validator checks the columns, nulls, and scalar values in an OMOP CDM CSV export before the file is loaded into a database. It derives the validation rules from PostgreSQL OMOP DDL, so ETL development can use the same table definitions as the target database.

📘 Documentation: https://cnag-biomedical-informatics.github.io/omop-csv-validator/

📦 CPAN Distribution: https://metacpan.org/pod/OMOP::CSV::Validator

🐳 Docker Hub Image: https://hub.docker.com/r/manuelrueda/omop-csv-validator/tags

Quick start

Install the release from CPAN:

cpan OMOP::CSV::Validator
omop-csv-validator \
  --ddl path/to/OMOPCDM_postgresql_5.4_ddl.sql \
  --input path/to/DRUG_EXPOSURE.csv
✅ CSV file 'path/to/DRUG_EXPOSURE.csv' is valid against the 'DRUG_EXPOSURE' schema.

Each invocation validates one CSV file against one OMOP table. See Installation for the recommended user-local setup and the Docker or Apptainer alternative; see the Quick Start for runnable valid and invalid examples.

Command-line and spreadsheet validation results

Scope

This project validates CSV structure and scalar values against DDL-derived rules. It complements database-level OMOP data-quality tools; it does not replace terminology, clinical, or post-load quality review.

Development

Use the development installation and run prove -l t/.

Citation and license

Citation metadata is available in CITATION.cff. The project is released under the Artistic License 2.0.

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